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Generate a bar chart of protein intensity values

compare_protein.Rd

Creates a ggplot bar chart comparing the intensity of a single protein either across all samples or grouped by a condition.

Usage

compare_protein(object, prot, prot_meta_col = NULL, condition = NULL)

# S4 method for class 'SummarizedExperiment'
compare_protein(object, prot, prot_meta_col = NULL, condition = NULL)

Arguments

object

The SummarizedExperiment object.

prot

A string specifying the name of the protein to plot.

prot_meta_col

A string naming the column in the rowData slot to search for the protein. Defaults to the first column.

condition

(Optional) A string naming the column in the colData slot to group samples by.

Value

A ggplot object.

Functions

  • compare_protein(SummarizedExperiment): Method for ProtData objects.