Create a ProtData Object from SomaScan Data

Processes SomaScan data from an ADAT object, optionally performs filtering (e.g., on buffer controls), and formats the result into a ProtData object for downstream analysis.

Usage

create_protdata_from_soma(adat, condition = NULL, filter = TRUE)

Arguments

adat

A SomaScan ADAT object, typically loaded using the SomaDataIO package.

condition

An optional data frame containing sample metadata. This is passed to the downstream create_protdata function for integration.

filter

A logical value (TRUE/FALSE) indicating whether to perform filtering on the data, including for buffer controls. Defaults to TRUE.

Value

A ProtData object formatted for use with other package functions.