Perform Gene Ontology (GO) Over-Representation Analysis (ORA) — enrich_go • ProtPipe

A wrapper around clusterProfiler::enrichGO to perform ORA to find enriched GO terms (Biological Process, Molecular Function, Cellular Component).

Usage

enrich_go(
  gene_id,
  all_gene_vector,
  enrich_pvalue = 1,
  org = org.Hs.eg.db::org.Hs.eg.db
)

Arguments

gene_id: A character vector of significant Entrez gene IDs to test.
all_gene_vector: A character vector of all background (universe) Entrez gene IDs against which to test.
enrich_pvalue: The p-value and q-value cutoff for enrichment. Defaults to 1.
org: An organism annotation database (e.g., org.Hs.eg.db).

Value

An enrichResult object if the analysis is successful and finds enriched terms, otherwise NULL.