Computes a pairwise correlation matrix for all samples based on their protein
intensity profiles. The result is returned in a long "tidy" format data table.
Usage
get_sample_correlation(object, method = "spearman")
Arguments
- object
A SummarizedExperiment object.
- method
The correlation method to use. Can be one of "spearman" (the
default), "pearson", or "kendall".
Value
A data.table with three columns: SampleA, SampleB, and a third
column named for the method used (e.g., Spearman), containing the
pairwise correlation coefficients.