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Creates a ggplot bar chart comparing the intensity of a single protein either across all samples or grouped by a condition.

compare_protein.Rd

Creates a ggplot bar chart comparing the intensity of a single protein either across all samples or grouped by a condition.

Usage

compare_protein(
  object,
  prot,
  prot_meta_col = NULL,
  condition = NULL,
  selected_groups = NULL
)

# S4 method for class 'SummarizedExperiment'
compare_protein(
  object,
  prot,
  prot_meta_col = NULL,
  condition = NULL,
  selected_groups = NULL
)

Arguments

object

The SummarizedExperiment object.

prot

A string specifying the name of the protein to plot.

prot_meta_col

A string naming the column in the rowData slot to search for the protein. Defaults to the first column.

condition

(Optional) A string naming the column in the colData slot to group samples by.

selected_groups

(Optional) A character vector of group names to filter by. Only used if 'condition' is provided.

Value

A ggplot object.

Functions

  • compare_protein(SummarizedExperiment): Method for SummarizedExperiment objects.