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Create a SummarizedExperiment Object from Olink NPX Data

create_se_from_olink.Rd

A wrapper function that processes a data frame of Olink NPX data, optionally merges it with a sample condition/metadata file, and formats the result into a SummarizedExperiment object for downstream analysis.

Usage

create_se_from_olink(npx, condition = NULL, filter = TRUE)

Arguments

npx

A data frame containing Olink NPX data, typically from OlinkAnalyze::read_npx().

condition

An optional data frame containing sample metadata. It is crucial that this file contains a column named 'SampleID' for merging.

filter

A logical value (TRUE/FALSE) indicating whether to filter out samples with QC warnings. Defaults to FALSE.

Value

A SummarizedExperiment object formatted for use with other package functions.