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Perform limma differential expression for a continuous outcome

do_comparison_continuous.Rd

This function takes a SummarizedExperiment object, a numeric condition column, and optional covariates, and performs limma-based differential expression.

Usage

do_comparison_continuous(object, condition)

# S4 method for class 'SummarizedExperiment'
do_comparison_continuous(object, condition)

Arguments

object

A SummarizedExperiment object

condition

Column name in colData(object) used as the continuous predictor

Value

A data frame with metadata, intensities, logFC, p-values

Methods (by class)

  • do_comparison_continuous(SummarizedExperiment): Method for SummarizedExperiment objects.