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Perform Gene Ontology (GO) Over-Representation Analysis (ORA)

enrich_go.Rd

A wrapper around clusterProfiler::enrichGO to perform ORA to find enriched GO terms (Biological Process, Molecular Function, Cellular Component).

Usage

enrich_go(
  gene_id,
  all_gene_vector,
  enrich_pvalue = 1,
  org = org.Hs.eg.db::org.Hs.eg.db,
  ont = "BP"
)

Arguments

gene_id

A character vector of significant Entrez gene IDs to test.

all_gene_vector

A character vector of all background (universe) Entrez gene IDs against which to test.

enrich_pvalue

The p-value and q-value cutoff for enrichment. Defaults to 1.

org

An organism annotation database (e.g., org.Hs.eg.db).

ont

GO ontology to test. One of "BP", "MF", "CC", or "ALL".

Value

An enrichResult object if the analysis is successful and finds enriched terms, otherwise NULL.