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Run Over-Representation Analysis for Custom Gene Sets

enrich_terms.Rd

A thin wrapper around clusterProfiler::enricher() for user-supplied gene sets represented as TERM2GENE and optional TERM2NAME tables.

Usage

enrich_terms(
  gene_id,
  all_gene_vector,
  term2gene,
  term2name = NULL,
  enrich_pvalue = 1
)

Arguments

gene_id

A character vector of significant gene IDs.

all_gene_vector

A character vector containing the background universe.

term2gene

A two-column data frame with term IDs in the first column and gene IDs in the second.

term2name

An optional two-column data frame with term IDs and readable term names.

enrich_pvalue

The p-value and q-value cutoff. Defaults to 1.

Value

An enrichResult object, or NULL if no terms are enriched.