Generate Markdown Report of Preprocessing Steps

Takes a SummarizedExperiment object with a populated processing_log in its metadata and writes a Markdown file summarizing the preprocessing steps in order.

Usage

generate_preprocessing_report(object, output_file = "preprocessing_report.md")

Arguments

object

A SummarizedExperiment object.

output_file

A character string giving the name of the output Markdown file.

Value

Invisibly returns the file path to the Markdown report.