Run GSEA for Custom Gene Sets

A thin wrapper around clusterProfiler::GSEA() for user-supplied gene sets represented as TERM2GENE and optional TERM2NAME tables.

Usage

gse_terms(gene_list, term2gene, term2name = NULL, enrich_pvalue = 1)

Arguments

gene_list

A named numeric vector of ranked genes.

term2gene

A two-column data frame with term IDs in the first column and gene IDs in the second.

term2name

An optional two-column data frame with term IDs and readable term names.

enrich_pvalue

The p-value cutoff. Defaults to 1.

Value

A gseaResult object, or NULL if no terms are enriched.